Perldoc (Pdoc rendered) documentation for BioPerl Modules| Module | Description |
| BioPerl Core Code | |
| BioPerl BioCORBA Server Toolkit (wraps bioperl objects as BioCORBA objects and runs them in an ORBit ORB) | |
| Bioperl BioCORBA Client Toolkit (wraps BioCORBA objects as bioperl objects) | |
| BioPerl SQL Database Interfaces - Sequences and Maps | |
| BioPerl Pedigree objects for managing and manipulating pedigree info | |
| BioPerl GUI object - Perl/Tk implementation for use in GenQuire | |
| BioPerl Pipeline modules for BioPipe Project | |
| BioPerl Run wrappers for running applications individually or within the BioPipe Project | |
| BioPerl Microarray project | BioPerl Network objects for parsing and analyzing protein-protein interaction data |