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Summary

Bio::Ontology::SimpleGOEngine::GraphAdaptor02 - Graph adaptor (v02.x) for
Bio::Ontology::SimpleGOEngine

Package variables

Inherit

Bio::Ontology::SimpleGOEngine::GraphAdaptor

Synopsis

No synopsis!

Description

Internal subclass of Bio::Ontology::SimpleGOEngine::GraphAdaptor for
Graph v0.2x.
Call this via Bio::Ontology::SimpleGOEngine::GraphAdaptor

Methods

Methods description

None available.

Methods code

sub edges {

  my $self=shift;
  my @edges02=$self->_graph->edges(@_);
  my @edges;
  while (@edges02) {
    my($u,$v)=(shift @edges02,shift @edges02);
    push(@edges,[$u,$v]);
  }
  @edges;
}

# edges_at
#   v0.2x uses edges() method and returns (u0,v0, u1,v1, ...)
#   v0.5x returns ([u0,v0], [u1,v1], ...)

}

sub edges_at {

  my $self=shift;
  $self->edges(@_);
}

# set_vertex_attribute
#   v0.2x uses set_attribute($attribute,$v,$value)

}

sub set_vertex_attribute {

  my($self,$v,$attribute,$value)=@_;
  $self->_graph->set_attribute($attribute,$v,$value);
}

# get_vertex_attribute
#   v0.2x uses get_attribute($attribute,$v)

}

sub get_vertex_attribute {

  my($self,$v,$attribute)=@_;
  $self->_graph->get_attribute($attribute,$v);
}

# set_edge_attribute
#   v0.2x uses set_attribute($attribute,$u,$v,$value)

}

sub set_edge_attribute {

  my($self,$u,$v,$attribute,$value)=@_;
  $self->_graph->set_attribute($attribute,$u,$v,$value);
}

# get_edge_attribute
#   v0.2x uses get_attribute($attribute,$u,$v)

}

sub get_edge_attribute {

  my($self,$u,$v,$attribute)=@_;
  $self->_graph->get_attribute($attribute,$u,$v);
}

1;

}

General documentation

User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing lists Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
with code and data examples if at all possible.

report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:

  https://redmine.open-bio.org/projects/bioperl/

Nat Goodman
Email: natg at shore.net
Address:

  Institute for Systems Biology
  1441 N 34th St
  Seattle, WA 98103-8904

The rest of the documentation details each of the object
methods. Internal methods are usually preceded with a _