Bio::PopGen GenotypeI
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Summary
Bio::PopGen::GenotypeI - A marker and alleles for a specific individual
Package variables
No package variables defined.
Inherit
Bio::Root::RootI
Synopsis
Give standard usage here
Description
Describe the interface here
Methods
marker_nameDescriptionCode
individual_idDescriptionCode
annotationDescriptionCode
get_AllelesDescriptionCode
Methods description
marker_namecode    nextTop
 Title   : marker_name
 Usage   : my $name = $genotype->marker_name();
 Function: Get the marker name for a genotype result
 Returns : string
 Args    : none
individual_idcodeprevnextTop
 Title   : individual_id
 Usage   : my $indid = $genotype->individual_id();
 Function: Gets the individual id associated with a genotype
           This is effectively a back reference since we will typically
           associate a genotype with an individual with an 
           individual HAS-A genotype relationship.
 Returns : unique id string for an individual
 Args    : none
annotationcodeprevnextTop
 Title   : annotation
 Usage   : my $annotation_collection = $genotype->annotation;
 Function: Get/set a Bio::AnnotationCollectionI for this genotype
 Returns : Bio::AnnotationCollectionI object
 Args    : [optional set] Bio::AnnotationCollectionI object
get_AllelescodeprevnextTop
 Title   : get_Alleles
 Usage   : my @alleles = $genotype->get_Alleles();
 Function: Get the alleles for a given marker and individual
 Returns : array of alleles (strings in many implementations)
 Args    : none
Methods code
marker_namedescriptionprevnextTop
sub marker_name {
    my ($self) = @_;
    $self->throw_not_implemented();
}
individual_iddescriptionprevnextTop
sub individual_id {
   my ($self) = @_;
   $self->throw_not_implemented();
}
annotationdescriptionprevnextTop
sub annotation {
   my ($self) = @_;
   $self->throw_not_implemented();
}
get_AllelesdescriptionprevnextTop
sub get_Alleles {
   my ($self) = @_;
   $self->throw_not_implemented();
}
1;
}
General documentation
FEEDBACKTop
Mailing ListsTop
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list. Your participation is much appreciated.
  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
Support Top
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
with code and data examples if at all possible.
Reporting BugsTop
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
email or the web:
  https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Jason StajichTop
Email jason-at-bioperl.org
APPENDIXTop
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _