Bio::Search::HSP hmmer3HSP
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Summary
Bio::Search::HSP::hmmer3HSP - DESCRIPTION of Object
Package variables
No package variables defined.
Inherit
Bio::Search::HSP::GenericHSP
Synopsis
Give standard usage here
Description
Describe the object here
Methods
newDescriptionCode
get_alnDescriptionCode
Methods description
newcode    nextTop
 Title   : new
 Usage   : my $obj = new Bio::Search::HSP::hmmer3HSP();
 Function: Builds a new Bio::Search::HSP::hmmer3HSP object 
 Returns : an instance of Bio::Search::HSP::hmmer3HSP
 Args    :
get_alncodeprevnextTop
 Title   : get_aln
 Usage   : my $aln = $hsp->gel_aln
 Function: Returns a Bio::SimpleAlign representing the HSP alignment
 Returns : Bio::SimpleAlign
 Args    : none
Methods code
newdescriptionprevnextTop
sub new {
  my($class,@args) = @_;

  my $self = $class->SUPER::new(@args);
  return $self;
}
get_alndescriptionprevnextTop
sub get_aln {
    my ($self) = shift;
    $self->warn("Inappropriate to build a Bio::SimpleAlign from a HMMER HSP object");
    return;
}

1;
}
General documentation
FEEDBACKTop
Mailing ListsTop
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list. Your participation is much appreciated.
  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
SupportTop
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
with code and data examples if at all possible.
Reporting BugsTop
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
  https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Thomas SharptonTop
Email thomas.sharpton@gmail.com
Describe contact details here
CONTRIBUTORSTop
Additional contributors names and emails here
APPENDIXTop
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _