Toolbar

Summary

Bio::SeqFeature::Gene::NC_Feature.pm - superclass for non-coding features

Package variables

Inherit

Bio::SeqFeature::Generic

Synopsis

Give standard usage here

Description

Describe the object here

Methods

Methods description

 Title   : is_coding
 Usage   : if ($feature->is_coding()) {
                     #do something
            }
 Function: Whether or not the feature codes for amino acid.
 Returns : FALSE
 Args    : none

 Title   : cds
 Usage   : $cds=$feature->cds();
 Function: get the coding sequence of this feature
 Returns : undef
 Args    : none

Methods code

sub new {

    my($class,@args) = @_;
    
    my $self = $class->SUPER::new(@args);

    my ($is_coding) =
	$self->_rearrange([qw(IS_CODING)],@args);
    # default is non-coding
    $self->is_coding(defined($is_coding) ? $is_coding : 0);

    return $self;

}

sub is_coding {

    my $self = shift;

    return $self->{'is_coding'} = shift if @_;
    return $self->{'is_coding'};

}

sub cds {

   my ($self,@args) = @_;
   return;

}


1;

}

General documentation

User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
with code and data examples if at all possible.

Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:

  https://redmine.open-bio.org/projects/bioperl/

Email dblock@gnf.org

The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _