use Bio::Tools::Coil
 my $parser = Bio::Tools::Coil->new();
 while( my $sp_feat = $parser->next_result($file) ) {
       #do something
       #eg
       push @sp_feat, $sp_feat;
 }

 Parser for Coil output

    my($class,@args) = @_;

    my $self = $class->SUPER::new(@args);
    $self->_initialize_io(@args);

    return $self;

    my ($self,$resfile) = @_;
    my $filehandle = $resfile;
    my %result_hash =_read_fasta($filehandle);#bala no file handle
        my @ids = keys %result_hash;
    my @feats; 
    foreach my $id (keys %result_hash){      
	my $pep = reverse ($result_hash{$id});
	my $count = my $switch = 0;
	my ($start, $end);
	while (my $aa = chop $pep) {
	    $count++;
	    if (!$switch && $aa eq "x") {
		$start = $count;
		$switch = 1;
	    }
	    elsif ($switch && $aa ne "x") {
		$end = $count-1;
		my (%feature);
		$feature{name}       = $id;
		$feature{start}      = $start;
		$feature{end}        = $end;
		$feature{source}     = "Coils";
		$feature{primary}    = 'ncoils';
		($feature{program})   = 'ncoils';
		$feature{logic_name} = 'Coils';
		my $new_feat = $self->create_feature (\%feature);
		$self->_add_prediction($new_feat);
		$switch = 0;
	    }
	}
    }

    $self->_predictions_parsed(1);

    my ($self,$resfile) = @_;
    my $gene;

    $self->parse_results($resfile) unless $self->_predictions_parsed();

    $gene = $self->_result();

    return $gene;

    my ($self) = @_;

    return unless(exists($self->{'_feats'}) && @{$self->{'_feats'}});
    return shift(@{$self->{'_feats'}});

    my ($self, $gene) = @_;

    if(! exists($self->{'_feats'})) {
        $self->{'_feats'} = [];
    }
    push(@{$self->{'_feats'}}, $gene);

    my ($self, $val) = @_;

    $self->{'_preds_parsed'} = $val if $val;
    if(! exists($self->{'_preds_parsed'})) {
        $self->{'_preds_parsed'} = 0;
    }
    return $self->{'_preds_parsed'};

    my ($self, $feat) = @_;


    # create feature object
    my $feature = Bio::SeqFeature::Generic->new
	(-seq_id     => $feat->{name},
	 -start       => $feat->{start},
	 -end         => $feat->{end},
	 -score       => $feat->{score},
	 -source      => $feat->{source},
	 -primary     => $feat->{primary},
	 -logic_name  => $feat->{logic_name}, 
	 );
    $feature->add_tag_value('evalue',0);
    $feature->add_tag_value('percent_id','NULL');
    $feature->add_tag_value("hid",$feat->{primary});


    return $feature;

    local (*FILE) = @_;
    my( $id , $seq , %name2seq);#bala
        while (<FILE>) {
	    chomp;		#bala
	    if (/^>(\S+)/) {

		my $new_id = $1;
		if ($id) {
		    $name2seq{$id} = $seq;
		}
		$id = $new_id ; $seq = "" ;
	    } elsif (eof) {
		if ($id) {
		    $seq .= $_ ;#bala line instead of $_
		    $name2seq{$id} = $seq;
		}
	    }
	    else {
		$seq .= $_;
	    }
        }
    return %name2seq;
}

1;

 User feedback is an integral part of the evolution of this and other
 Bioperl modules. Send your comments and suggestions preferably to
 the Bioperl mailing list.  Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

  https://redmine.open-bio.org/projects/bioperl/

 Based on the EnsEMBL module Bio::EnsEMBL::Pipeline::Runnable::Protein::Coil
 originally written by Marc Sohrmann (ms2@sanger.ac.uk)
 Written in BioPipe by Balamurugan Kumarasamy <savikalpa@fugu-sg.org>
# Please direct questions and support issues to <bioperl-l@bioperl.org> 
#
 Cared for by the Fugu Informatics team (fuguteam@fugu-sg.org)

 The rest of the documentation details each of the object methods.
 Internal methods are usually preceded with a _