Bio::SearchIO
EventHandlerI
Summary
Bio::SearchIO::EventHandlerI - An abstract Event Handler for Search Result parsing
Package variables
No package variables defined.
Included modules
Inherit
Synopsis
# do not use this object directly it is an interface
# See Bio::SearchIO::SearchResultEventBuilder for an implementation
use Bio::SearchIO::SearchResultEventBuilder;
my $handler = new Bio::SearchIO::SearchResultEventBuilder();
Description
This interface describes the basic methods needed to handle Events
thrown from parsing a Search Result such as FASTA, BLAST, or HMMer.
Methods
Methods description
Title : start_result
Usage : $handler->start_result($data)
Function: Begins a result event cycle
Returns : none
Args : Type of Result |
Title : end_result
Usage : $handler->end_result($data)
Function: Ends a result event cycle
Returns : Bio::Search::Result::ResultI object
Args : none |
Title : start_hsp
Usage : $handler->start_hsp($data)
Function: Start a HSP event cycle
Returns : none
Args : type of element
associated hashref |
Title : end_hsp
Usage : $handler->end_hsp()
Function: Ends a HSP event cycle
Returns : Bio::Search::HSP::HSPI object
Args : type of event and associated hashref |
Title : start_hit
Usage : $handler->start_hit()
Function: Starts a Hit event cycle
Returns : none
Args : type of event and associated hashref |
Title : end_hit
Usage : $handler->end_hit()
Function: Ends a Hit event cycle
Returns : Bio::Search::Hit::HitI object
Args : type of event and associated hashref |
Methods code
sub start_result
{ my ($self) = @_;
$self->throw_not_implemented();} | sub end_result
{ my ($self,@args) = @_;
$self->throw_not_implemented(); } | sub start_hsp
{ my ($self,@args) = @_;
$self->throw_not_implemented(); } | sub end_hsp
{ my ($self,@args) = @_;
$self->throw_not_implemented(); } | sub start_hit
{ my ($self,@args) = @_;
$self->throw_not_implemented } | sub end_hit
{ my ($self,@args) = @_;
$self->throw_not_implemented(); } | General documentation
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| AUTHOR - Jason Stajich | Top |
Additional contributors names and emails here
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
| Bio::Event::EventHandlerI methods | Top |
Title : will_handle
Usage : if( $handler->will_handle($event_type) ) { ... }
Function: Tests if this event builder knows how to process a specific event
Returns : boolean
Args : event type name