Summary

Bio::Factory::BlastResultFactory - Factory for Bio::Search::Result::BlastResult objects

Package variables

Included modules

Inherit

Bio::Factory::ResultFactoryI Bio::Root::Root

Synopsis

    use Bio::Factory::BlastResultFactory;

    my $result_fact = Bio::Factory::BlastResultFactory->new();

    my $result = $result_fact->create_result( %parameters );

See documentation for create_result() for information about %parameters.

Description

This module encapsulates code for creating Bio::Search::Result::BlastResult
and Bio::Search::HSP::BlastHSP objects from traditional BLAST report
data (i.e., non-XML formatted).

Methods

Methods description

 Title   : create_result
 Usage   : $result = $factory->create_result( %params );
 Function: Creates a new Bio::Search::Result::BlastResult object.
 Returns : A single Bio::Search::Result::BlastResult object
 Args    : none

Methods code

sub new {

    my ($class, @args) = @_;
    my $self = $class->SUPER::new(@args);
    return $self;

}

sub create_result {

    my ($self, @args) = @_;

    my $result = Bio::Search::Result::BlastResult->new( @args );

    return $result;

}

General documentation

User feedback is an integral part of the evolution of this
and other Bioperl modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists.
Your participation is much appreciated.

  bioperl-l@bioperl.org                - General discussion
  http://bio.perl.org/MailList.html    - About the mailing lists

Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via email
or the web:

  bioperl-bugs@bio.perl.org
  http://bugzilla.bioperl.org/

Steve Chervitz <sac@bioperl.org>
See the FEEDBACK section for where to send bug reports and comments.

Copyright (c) 2001 Steve Chervitz. All Rights Reserved.

This software is provided "as is" without warranty of any kind.

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _