Bio::Biblio
MedlineArticle
Summary
Bio::Biblio::MedlineArticle - Representation of a MEDLINE article
Package variables
Privates (from "my" definitions)
%_allowed = ( _affiliation => undef, _chemicals => 'ARRAY', _citation_owner => undef, _comment_ins => 'ARRAY', _comment_ons => 'ARRAY', _date_of_electronic_publication => undef, _erratum_fors => 'ARRAY', _erratum_ins => 'ARRAY', _gene_symbols => undef, _general_notes => 'ARRAY', _grant_list_complete => undef, _grants => 'ARRAY', _medline_date => undef, _medline_id => undef, _medline_page => undef, _mesh_headings => 'ARRAY', _number_of_references => undef, _original_report_ins => 'ARRAY', _other_abstracts => 'ARRAY', _other_ids => 'ARRAY', _other_languages => undef, _pmid => undef, _republished_froms => 'ARRAY', _republished_ins => 'ARRAY', _retraction_ins => 'ARRAY', _retraction_ofs => 'ARRAY', _season => undef, _status => undef, _summary_for_patients_ins => 'ARRAY', _update_ins => 'ARRAY', _update_ofs => 'ARRAY', _vernacular_title => undef, )
Included modules
Inherit
Synopsis
$obj = new Bio::Biblio::MedlineArticle (-mesh_headings => ...);
# how are Mesh terms stored:
use Data::Dumper;
print Data::Dumper->Dump ( [$obj->mesh_headings], ['MeshHeadings']);
It produces (something like) this:
'MeshHeadings' => [
{ 'descriptorName' => 'Adult' },
{ 'descriptorName' => 'Cardiovascular Diseases',
'subHeadings' => [ { 'subHeading' => 'etiology' },
{ 'majorTopic' => 'Y',
'subHeading' => 'mortality' } ] },
{ 'descriptorName' => 'Child Development',
'subHeadings' => [ { 'majorTopic' => 'Y',
'subHeading' => 'physiology' } ] },
{ 'descriptorName' => 'Human' },
]
Description
A storage object for a MEDLINE article.
See its place in the class hierarchy in
http://industry.ebi.ac.uk/openBQS/images/bibobjects_perl.gif
The following attributes are specific to this class
(however, you can also set and get all attributes defined in the parent classes):
affiliation
chemicals type: array ref of hashes
citation_owner
comment_ins type: array ref of hashes
comment_ons type: array ref of hashes
date_of_electronic_publication
erratum_fors type: array ref of hashes
erratum_in type: array ref of hashes
gene_symbols
general_notes type: array ref of hashes
grant_list_complete
grants type: array ref of hashes
medline_date
medline_id
medline_page
mesh_headings type: array ref of hashes
number_of_references
original_report_ins type: array ref of hashes
other_abstracts type: array ref of hashes
other_ids type: array ref of hashes
other_languages
pmid
republished_froms type: array ref of hashes
republished_ins type: array ref of hashes
retraction_ins type: array ref of hashes
retraction_ofs type: array ref of hashes
season
status
summary_for_patients_ins type: array ref of hashes
update_ins type: array ref of hashes
update_ofs type: array ref of hashes
vernacular_title
Methods
| _accessible | No description | Code |
| _attr_type | No description | Code |
Methods description
None available.
Methods code
sub _accessible
{ my ($self, $attr) = @_;
exists $_allowed{$attr} or $self->SUPER::_accessible ($attr);} | sub _attr_type
{ my ($self, $attr) = @_;
if (exists $_allowed{$attr}) {
return $_allowed{$attr};
} else {
return $self->SUPER::_attr_type ($attr);
}} | General documentation
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
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bioperl-l@bioperl.org - General discussion
http://bioperl.org/MailList.shtml - About the mailing lists
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
email or the web:
bioperl-bugs@bioperl.org
http://bugzilla.bioperl.org/
Copyright (c) 2002 European Bioinformatics Institute. All Rights Reserved.
This module is free software; you can redistribute it and/or modify
it under the same terms as Perl itself.
This software is provided "as is" without warranty of any kind.