Bio::Biblio PubmedArticle
SummaryIncluded librariesPackage variablesSynopsisDescriptionGeneral documentationMethods
Summary
Bio::Biblio::PubmedArticle - Representation of a PUBMED article
Package variables
Privates (from "my" definitions)
%_allowed = ( _pubmed_status => undef, _pubmed_provider_id => undef, _pubmed_history_list => 'ARRAY', _pubmed_article_id_list => 'ARRAY', _pubmed_url_list => 'ARRAY', )
Included modules
Bio::Biblio::MedlineArticle
Inherit
Bio::Biblio::MedlineArticle
Synopsis
    $obj = new Bio::Biblio::PubmedArticle
                  (-pubmed_history_list =>
                       [ { 'pub_status' => 'pubmed',
			   'date' => '2001-12-1T10:0:00Z' },
			 { 'pub_status' => 'medline',
			   'date' => '2002-1-5T10:1:00Z' } ],
                   -pubmed_status => 'ppublish');
 --- OR ---

    $obj = new Bio::Biblio::PubmedArticle;
    $obj->pubmed_status ('ppublish');
Description
A storage object for a general PUBMED article.
See its place in the class hierarchy in
http://industry.ebi.ac.uk/openBQS/images/bibobjects_perl.gif The following attributes are specific to this class
(however, you can also set and get all attributes defined in the parent classes):
  pubmed_status
  pubmed_provider_id
  pubmed_history_list       type: array ref of hashes
  pubmed_article_id_list    type: array ref of hashes
  pubmed_url_list           type: array ref of hashes
Methods
_accessible
No description
Code
_attr_type
No description
Code
Methods description
None available.
Methods code
_accessibledescriptionprevnextTop
sub _accessible {
	my ($self, $attr) = @_;
	return 1 if exists $_allowed{$attr};
        foreach my $parent (@ISA) {
	    return 1 if $parent->_accessible ($attr);
	}
}
_attr_typedescriptionprevnextTop
sub _attr_type {
	my ($self, $attr) = @_;
	if (exists $_allowed{$attr}) {
	    return $_allowed{$attr};
	} else {
	    foreach my $parent (@ISA) {
		if ($parent->_accessible ($attr)) {
		    return $parent->_attr_type ($attr);
		}
	    }
	}
	return 'unknown';
}
General documentation
SEE ALSOTop
    *(1)
    OpenBQS home page: http://industry.ebi.ac.uk/openBQS
    *(2)
    Comments to the Perl client: http://industry.ebi.ac.uk/openBQS/Client_perl.html
FEEDBACKTop
Mailing ListsTop
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list. Your participation is much appreciated.
  bioperl-l@bioperl.org              - General discussion
  http://bioperl.org/MailList.shtml  - About the mailing lists
Reporting BugsTop
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
email or the web:
  bioperl-bugs@bioperl.org
  http://bugzilla.bioperl.org/
AUTHORTop
Martin Senger (senger@ebi.ac.uk)
COPYRIGHTTop
Copyright (c) 2002 European Bioinformatics Institute. All Rights Reserved.
This module is free software; you can redistribute it and/or modify
it under the same terms as Perl itself.
DISCLAIMERTop
This software is provided "as is" without warranty of any kind.