Bio::Expression FeatureI
SummaryIncluded librariesPackage variablesSynopsisDescriptionGeneral documentationMethods
Summary
Bio::Expression::FeatureI - an interface class for DNA/RNA features
Package variables
No package variables defined.
Included modules
Bio::Root::Root
Inherit
Bio::PrimarySeqI Bio::Root::Root
Synopsis
Do not use this module directly
Description
This provides a standard bioperl interface class for representing
DNA and RNA features. It cannot be instantiated directly, but serves
as an abstract base class for implementors.
Methods
quantitationDescriptionCode
quantitation_unitsDescriptionCode
standard_deviationDescriptionCode
sample_countDescriptionCode
Methods description
quantitation()code    nextTop
  Title   : value
  Usage   : $val = $ftr->quantitation()
  Function: get/set the feature's quantitation
  Returns : A numeric value
  Args    : a new numeric value (optional)
quantitation_units()codeprevnextTop
  Title   : quantitation_units
  Usage   : $units = $ftr->quantitation_units()
  Function: get/set the units of the feature's quantitation
  Returns : A string or undef
  Args    : a new string (optional)
standard_deviation()codeprevnextTop
  Title   : standard_deviation
  Usage   : $std_dev = $ftr->standard_deviation()
  Function: get/set the feature's standard deviation of quantitation()
  Returns : A numeric value
  Args    : a new numeric value (optional)
  Comments: no calculation is done here
sample_count()codeprevnextTop
  Title   : sample_count
  Usage   : $sample_count = $ftr->sample_count()
  Function: get/set the number of samples used to calculate
            quantitation()
  Returns : An integer
  Args    : a new integer (optional)
Methods code
quantitationdescriptionprevnextTop
sub quantitation {
  shift->throw_not_implemented();
}
quantitation_unitsdescriptionprevnextTop
sub quantitation_units {
  shift->throw_not_implemented();
}
standard_deviationdescriptionprevnextTop
sub standard_deviation {
  shift->throw_not_implemented();
}
sample_countdescriptionprevnextTop
sub sample_count {
  shift->throw_not_implemented();
}
General documentation
FEEDBACKTop
Mailing ListsTop
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
  bioperl-l@bioperl.org            - General discussion
  http://bioperl.org/MailList.shtml - About the mailing lists
Reporting BugsTop
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution.
Bug reports can be submitted via email or the web:
  bioperl-bugs@bio.perl.org
  http://bugzilla.bioperl.org/
AUTHORTop
Allen Day <allenday@ucla.edu>
APPENDIXTop
The rest of the documentation details each of the object
methods. Internal methods are usually preceded with a _