Bio::Search::Hit Fasta
SummaryIncluded librariesPackage variablesSynopsisDescriptionGeneral documentationMethods
Summary
Bio::Search::Hit::Fasta - Hit object specific for Fasta-generated hits
Package variables
Privates (from "my" definitions)
@AUTOLOAD_OK = qw( _ID _DESC _SIZE _INITN _INIT1 _OPT _ZSC _E_VAL )
%AUTOLOAD_OK = ()
Included modules
Bio::Search::Hit::HitI
Inherit
Bio::Search::Hit::HitI
Synopsis
    These objects are generated automatically by Bio::Search::Processor::Fasta,
and shouldn't be used directly.
Description
    Bio::Search::Hit::* objects are data structures that contain information
about specific hits obtained during a library search.  Some information will
be algorithm-specific, but others will be generally defined, such as the
ability to obtain alignment objects corresponding to each hit.
Methods
_initialize
No description
Code
AUTOLOAD
No description
Code
Methods description
None available.
Methods code
_initializedescriptionprevnextTop
sub _initialize {
    my($self, %args) = @_;

    my $make = $self->SUPER::_initialize(%args);

    while (my ($key, $val) = each %args) {
	$key = '_' . uc($key);
	$self->$key($val);
    }

    return $make; # success - we hope!
}
AUTOLOADdescriptionprevnextTop
sub AUTOLOAD {
    my ($self, $val) = @_;

    $AUTOLOAD =~ s/.*:://;

    if ( $AUTOLOAD_OK{$AUTOLOAD} ) {
        $self->{$AUTOLOAD} = $val if defined $val;
        return $self->{$AUTOLOAD};
    } else {
        $self->throw("Unallowed accessor: $AUTOLOAD !");
    }
}
General documentation
FEEDBACKTop
Mailing ListsTop
User feedback is an integral part of the evolution of this
and other Bioperl modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists.
Your participation is much appreciated.
  bioperl-l@bioperl.org             - General discussion
  http://bio.perl.org/MailList.html - About the mailing lists
Reporting BugsTop
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via email
or the web:
  bioperl-bugs@bio.perl.org
  http://bugzilla.bioperl.org/
AUTHOR - Aaron MackeyTop
Email amackey@virginia.edu
APPENDIXTop
The rest of the documentation details each of the object
methods. Internal methods are usually preceded with a _