Bio::DB::GFF::Aggregator
ucsc_softberry
Summary
Bio::DB::GFF::Aggregator::ucsc_softberry -- UCSC softberry aggregator
Package variables
No package variables defined.
Included modules
Inherit
Synopsis
use Bio::DB::GFF;
# Open the sequence database
my $db = Bio::DB::GFF->new( -adaptor => 'dbi:mysql',
-dsn => 'dbi:mysql:elegans42',
-aggregator => ['transcript','clone'],
);
-------------------------------------------------
Aggregator method: softberry
Main method: transcript
Sub methods: softberryGene
-------------------------------------------------
Description
Methods
Methods description
Title : method
Usage : $aggregator->method
Function: return the method for the composite object
Returns : the string "softberry"
Args : none
Status : Public |
Title : part_names
Usage : $aggregator->part_names
Function: return the methods for the sub-parts
Returns : empty list
Args : none
Status : Public |
Title : main_name
Usage : $aggregator->main_name
Function: return the method for the main component
Returns : the string "transcript:softberryGene"
Args : none
Status : Public |
Methods code
sub method
{ 'softberry' } | sub part_names
{ return (); } | sub main_name
{ return 'transcript:softberryGene'; } | General documentation
None reported.
Allen Day <allenday@ucla.edu>.
Copyright (c) 2002 Allen Day, University of California, Los Angeles.
This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself.