Bio::Graphics::Glyph wave
SummaryIncluded librariesPackage variablesSynopsisDescriptionGeneral documentationMethods
Summary
Bio::Graphics::Glyph::wave - The "wave" glyph
Package variables
No package variables defined.
Inherit
Bio::Graphics::Glyph::generic
Synopsis
  See Bio::Graphics::Panel and Bio::Graphics::Glyph.
Description
This glyph draws a sine wave with an optional circle in the beginning.
The wave can also become a straight line. In addition to the common options, the following glyph-specific
options are recognized:
  Option      Description                  Default
------ ----------- -------
-spread The "spread" of the sine curve 0.3 Values from 0.1 to 0.5 look best -line Whether to draw a line 0 instead of a wave (1 or 0) -circle Whether to draw a circle 0 in the left corner (1 or 0) -radius The radius of the circle 5 if present
Methods
default_spread
No description
Code
default_radius
No description
Code
draw_component
No description
Code
Methods description
None available.
Methods code
default_spreaddescriptionprevnextTop
sub default_spread {
  return 0.3;
}
default_radiusdescriptionprevnextTop
sub default_radius {
  return 5;
}
draw_componentdescriptionprevnextTop
sub draw_component {
  my $self = shift;
  my $gd = shift;
  my ($x1,$y1,$x2,$y2) = $self->calculate_boundaries(@_);
  
  my $spread = defined $self->option('spread') ? $self->option('spread') : $self->default_spread();
  
  my $fg = $self->fgcolor;

  my $height = ($y2-$y1)/2;
my $midY = $y1 + $height; if ($self->option('circle') == 1) { my $radius = defined $self->option('radius') ? $self->option('radius') : $self->default_radius(); $gd->ellipse($x1+$radius,$midY,2*$radius,2*$radius,$fg); $x1 = $x1+2*$radius; } if ($self->option('line') == 1) { if ($x1 < $x2) { $gd->line($x1,$midY,$x2,$midY,$fg); } return; } my ($oldX, $oldY); foreach my $x ($x1..$x2) { my $y = -$height * sin ($spread * ($x-$x1))+$midY; if ($x>$x1) { $gd->line($oldX,$oldY,$x,$y,$fg); } $oldX=$x; $oldY=$y; }
}
General documentation
BUGSTop
Please report them.
SEE ALSOTop
Bio::Graphics::Panel,
Bio::Graphics::Glyph,
Bio::Graphics::Glyph::arrow,
Bio::Graphics::Glyph::cds,
Bio::Graphics::Glyph::crossbox,
Bio::Graphics::Glyph::diamond,
Bio::Graphics::Glyph::dna,
Bio::Graphics::Glyph::dot,
Bio::Graphics::Glyph::ellipse,
Bio::Graphics::Glyph::extending_arrow,
Bio::Graphics::Glyph::generic,
Bio::Graphics::Glyph::graded_segments,
Bio::Graphics::Glyph::heterogeneous_segments,
Bio::Graphics::Glyph::line,
Bio::Graphics::Glyph::pinsertion,
Bio::Graphics::Glyph::primers,
Bio::Graphics::Glyph::rndrect,
Bio::Graphics::Glyph::segments,
Bio::Graphics::Glyph::ruler_arrow,
Bio::Graphics::Glyph::toomany,
Bio::Graphics::Glyph::transcript,
Bio::Graphics::Glyph::transcript2,
Bio::Graphics::Glyph::translation,
Bio::Graphics::Glyph::triangle,
Bio::DB::GFF,
Bio::SeqI,
Bio::SeqFeatureI,
Bio::Das,
GD
AUTHORTop
Vsevolod (Simon) Ilyushchenko <simonf@cshl.edu>.
Copyright (c) 2004 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.