| EventHandlerI | An abstract Event Handler for Search Result parsing |
| FastHitEventBuilder | Event Handler for SearchIO events. |
| IteratedSearchResultEventBuilder | Event Handler for
SearchIO events. |
| SearchResultEventBuilder | Event Handler for SearchIO events. |
| SearchWriterI | Interface for outputting parsed Search results |
| axt | a parser for axt format reports |
| blast | Event generator for event based parsing of
blast reports |
| blasttable | Driver module for SearchIO for parsing NCBI -m 8/9 format |
| blastxml | A SearchIO implementation of NCBI Blast XML parsing. |
| exonerate | parser for Exonerate |
| fasta | A SearchIO parser for FASTA results |
| hmmer | A parser for HMMER output (hmmpfam, hmmsearch) |
| hmmer_pull | A parser for HMMER output |
| megablast | a driver module for Bio::SearchIO to parse
megablast reports (format 0) |
| psl | A parser for PSL output (UCSC) |
| sim4 | parser for Sim4 alignments |
| waba | SearchIO parser for Jim Kent WABA program
alignment output |
| wise | Parsing of wise output as alignments |