Bio::DB::BioSQL::Pg BasePersistenceAdaptorDriver
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Summary
Bio::DB::BioSQL::Pg::BasePersistenceAdaptorDriver - DESCRIPTION of Object
Package variables
No package variables defined.
Included modules
Bio::DB::BioSQL::BaseDriver
Inherit
Bio::DB::BioSQL::BaseDriver
Synopsis
Give standard usage here
Description
Describe the object here
Methods
newDescriptionCode
primary_key_nameDescriptionCode
sequence_nameDescriptionCode
Methods description
newcode    nextTop
 Title   : new
Usage : my $obj = Bio::DB::BioSQL::Pg::BasePersistenceAdaptorDriver->new();
Function: Builds a new Bio::DB::BioSQL::Pg::BasePersistenceAdaptorDriver object
Returns : an instance of Bio::DB::BioSQL::Pg::BasePersistenceAdaptorDriver
Args :
primary_key_namecodeprevnextTop
 Title   : primary_key_name
Usage :
Function: Obtain the name of the primary key attribute for the given table in
the relational schema.
This implementation overrides the default for certain tables that do not have their own primary key. Example : Returns : The name of the primary key (a string) Args : The name of the table (a string)
sequence_namecodeprevnextTop
 Title   : sequence_name
Usage :
Function: Returns the name of the primary key generator (SQL sequence)
for the given table.
Example : Returns : the name of the sequence (a string) Args : The name of the table.
Methods code
newdescriptionprevnextTop
sub new {
    my($class,@args) = @_;

    my $self = $class->SUPER::new(@args);

    # the table, association, and column mappings for mySQL are identical
# to the default ones, so no changes necessary here
return $self;
}
primary_key_namedescriptionprevnextTop
sub primary_key_name {
    my ($self,$table) = @_;

    if($table eq "biosequence") {
	$table = $self->table_name("Bio::BioEntry");
    } elsif($table eq "taxon_name") {
	$table = $self->table_name("TaxonNode");
    }
    return $self->SUPER::primary_key_name($table);
}
sequence_namedescriptionprevnextTop
sub sequence_name {
    my ($self,$table) = @_;

    if($table eq "biosequence") {
	$table = $self->table_name("Bio::BioEntry");
    } elsif($table eq "taxon_name") {
	$table = $self->table_name("TaxonNode");
    }
    return $table . "_pk_seq";
}

1;
}
General documentation
FEEDBACKTop
Mailing ListsTop
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list. Your participation is much appreciated.
  bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support Top
 
Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
with code and data examples if at all possible.
Reporting BugsTop
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
email or the web:
  bioperl-bugs@bioperl.org
http://bugzilla.open-bio.org/
AUTHOR - Yves BastideTop
Email ybastide at irisa.fr
CONTRIBUTORSTop
 Hilmar Lapp, hlapp at gmx.net
APPENDIXTop
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _