Bio::Biblio PubmedJournalArticle
SummaryIncluded librariesPackage variablesSynopsisDescriptionGeneral documentationMethods
Toolbar
WebCvs
Summary
Bio::Biblio::PubmedJournalArticle - Representation of a PUBMED journal article
Package variables
Privates (from "my" definitions)
%_allowed = ( )
Inherit
Bio::Biblio::MedlineJournalArticle Bio::Biblio::PubmedArticle
Synopsis
    $obj = Bio::Biblio::PubmedJournalArticle->new(
# some attributes from MedlineJournalArticle -title => 'Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species.', -journal => Bio::Biblio::MedlineJournal->new(-issn => '0027-8424'), -volume => 96, -issue => 7, # and some from PubmedArticle -pubmed_history_list => [ { 'pub_status' => 'pubmed', 'date' => '2001-12-1T10:0:00Z' }, { 'pub_status' => 'medline', 'date' => '2002-1-5T10:1:00Z' } ], -pubmed_status => 'ppublish'); #--- OR --- $obj = Bio::Biblio::PubmedJournalArticle->new(); $obj->title ('...'); $obj->journal (Bio::Biblio::MedlineJournal->new(-issn => '0027-8424')); $obj->pubmed_status ('ppublish');
Description
A storage object for a PUBMED journal article.
See its place in the class hierarchy in
http://www.ebi.ac.uk/~senger/openbqs/images/bibobjects_perl.gif There are no specific attributes in this class
(however, you can set and get all attributes defined in the parent classes).
Methods
_accessible
No description
Code
_attr_type
No description
Code
Methods description
None available.
Methods code
_accessibledescriptionprevnextTop
sub _accessible {
	my ($self, $attr) = @_;
	return 1 if exists $_allowed{$attr};
        foreach my $parent (@ISA) {
	    return 1 if $parent->_accessible ($attr);
	}
    }

    # return an expected type of given $attr
}
_attr_typedescriptionprevnextTop
sub _attr_type {
	my ($self, $attr) = @_;
	if (exists $_allowed{$attr}) {
	    return $_allowed{$attr};
	} else {
	    foreach my $parent (@ISA) {
		if ($parent->_accessible ($attr)) {
		    return $parent->_attr_type ($attr);
		}
	    }
	}
	return 'unknown';
    }
}


1;
__END__
}
General documentation
SEE ALSOTop
    *(1)
    OpenBQS home page: http://www.ebi.ac.uk/~senger/openbqs/
    *(2)
    Comments to the Perl client: http://www.ebi.ac.uk/~senger/openbqs/Client_perl.html
FEEDBACKTop
Mailing ListsTop
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list. Your participation is much appreciated.
  bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support Top
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
with code and data examples if at all possible.
Reporting BugsTop
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
  https://redmine.open-bio.org/projects/bioperl/
AUTHORTop
Martin Senger (senger@ebi.ac.uk)
COPYRIGHTTop
Copyright (c) 2002 European Bioinformatics Institute. All Rights Reserved.
This module is free software; you can redistribute it and/or modify
it under the same terms as Perl itself.
DISCLAIMERTop
This software is provided "as is" without warranty of any kind.