Bio::DB::GFF::Adaptor ace
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Summary
Bio::DB::GFF::Adaptor::ace -- ace interface (for multiple inheritance)
Package variables
No package variables defined.
Included modules
Ace
Bio::DB::GFF::Util::Rearrange
Synopsis
Pending
See Bio::DB::GFF and Bio::DB::GFF::Adaptor::dbi::mysql
Description
No description!
Methods
dna_db
No description
Code
acedb
No description
Code
freshen_aceDescriptionCode
Methods description
freshen_acecode    nextTop
 Title   : freshen
Usage : $flag = Bio::DB::GFF->freshen_ace;
Function: Refresh internal acedb handle
Returns : flag if correctly freshened
Args : none
Status : Public
ACeDB has an annoying way of timing out, leaving dangling database
handles. This method will invoke the ACeDB reopen() method, which
causes dangling handles to be refreshed. It has no effect if you are
not using ACeDB to create ACeDB objects.
Methods code
dna_dbdescriptionprevnextTop
sub dna_db {
   my $self = shift;
  my $d = $self->{dna_db};
  $self->{dna_db} = shift if @_;
  $d;
}
acedbdescriptionprevnextTop
sub acedb {
   my $self = shift;
  my $d = $self->{acedb};
  $self->{acedb} = shift if @_;
  $d;
}
freshen_acedescriptionprevnextTop
sub freshen_ace {
  my $acedb = shift->acedb or return;
  $acedb->reopen();
}

1;
}
General documentation
SEE ALSOTop
Bio::DB::GFF, bioperl
AUTHORTop
Lincoln Stein <lstein@cshl.org>.
Copyright (c) 2002 Cold Spring Harbor Laboratory.
This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself.