Bio::DB::GFF::Aggregator orf
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Summary
Bio::DB::GFF::Aggregator::orf -- An aggregator for orf regions
Package variables
No package variables defined.
Included modules
Bio::DB::GFF::Aggregator
Inherit
Bio::DB::GFF::Aggregator
Synopsis
  use Bio::DB::GFF;
# Open the sequence database my $db = Bio::DB::GFF->new( -adaptor => 'dbi:mysql', -dsn => 'dbi:mysql:elegans42', -aggregator => ['orf','clone'], ); --------------------------- Aggregator method: orf Main method: -none- Sub methods: ORF ---------------------------
Description
Bio::DB::GFF::Aggregator::orf was written to work with the "cds"
glyph. GFF files. It aggregates raw "ORF" features into "coding"
features. This is basically identical to the "coding" aggregator,
except that it looks for features of type "ORF" rather than "cds".
Methods
methodDescriptionCode
part_namesDescriptionCode
Methods description
methodcode    nextTop
 Title   : method
Usage : $aggregator->method
Function: return the method for the composite object
Returns : the string "orf"
Args : none
Status : Public
part_namescodeprevnextTop
 Title   : part_names
Usage : $aggregator->part_names
Function: return the methods for the sub-parts
Returns : the list "CDS"
Args : none
Status : Public
Methods code
methoddescriptionprevnextTop
sub method {
 'orf'
}
part_namesdescriptionprevnextTop
sub part_names {
  return qw(ORF);
}

1;
__END__
}
General documentation
BUGSTop
None reported.
SEE ALSOTop
Bio::DB::GFF, Bio::DB::GFF::coding,
Bio::DB::GFF::Aggregator, Bio::Graphics::Glyph::cds
AUTHORTop
Lincoln Stein <lstein@cshl.org>.
Copyright (c) 2001 Cold Spring Harbor Laboratory.
This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself.