Bio::Factory SeqAnalysisParserFactoryI
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Summary
Bio::Factory::SeqAnalysisParserFactoryI - interface describing objects capable
of creating SeqAnalysisParserI compliant parsers
Package variables
No package variables defined.
Included modules
Carp
Inherit
Bio::Root::RootI
Synopsis
    # initialize an object implementing this interface, e.g.
$factory = Bio::Factory::SeqAnalysisParserFactory->new();
# obtain a parser object
$parser = $factory->get_parser(-input=>$inputobj,
-params=>[@params],
-method => $method);
# $parser is an object implementing Bio::SeqAnalysisParserI
# annotate sequence with features produced by parser
while(my $feat = $parser->next_feature()) {
$seq->add_SeqFeature($feat);
}
Description
This is an interface for factory classes capable of instantiating
SeqAnalysisParserI implementing parsers.
The concept behind the interface is a generic analysis result parsing
in high-throughput automated sequence annotation pipelines. See
Bio::SeqAnalysisParserI for more documentation of this concept.
Methods
get_parserDescriptionCode
Methods description
get_parsercode    nextTop
 Title   : get_parser
Usage : $factory->get_parser(-input=>$inputobj,
[ -params=>[@params] ],
-method => $method)
Function: Creates and returns a parser object for the given input and method.
The type of input which is suitable depends on the implementation,
but a good-style implementation should allow both file names and
streams (filehandles).
A particular implementation may not be able to create a parser for the requested method. In this case it shall return undef. Parameters (-params argument) are passed on to the parser object and therefore are specific to the parser to be created. An implementation of this interface should make this argument optional. Example : Returns : A Bio::SeqAnalysisParserI implementing object. Args : input - object/file where analysis results are coming from,
params - parameter to use when parsing/running analysis
method - method of analysis
Methods code
get_parserdescriptionprevnextTop
sub get_parser {
    my ( $self, @args) = @_;
    $self->throw_not_implemented();
}

1;
}
General documentation
FEEDBACKTop
Mailing ListsTop
User feedback is an integral part of the evolution of this
and other Bioperl modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists.
Your participation is much appreciated.
  bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support Top
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
with code and data examples if at all possible.
Reporting BugsTop
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
  https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Hilmar Lapp, Jason StajichTop
Email Hilmar Lapp <hlapp@gmx.net>, Jason Stajich <jason@bioperl.org>
APPENDIXTop
The rest of the documentation details each of the object
methods. Internal methods are usually preceded with a _