Bio::Factory SequenceFactoryI
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Summary
Bio::Factory::SequenceFactoryI - This interface allows for generic building of sequences in factories which create sequences (like SeqIO)
Package variables
No package variables defined.
Inherit
Bio::Factory::ObjectFactoryI
Synopsis
# do not use this object directly it is an interface
# get a Bio::Factory::SequenceFactoryI object like
    use Bio::Seq::SeqFactory;
my $seqbuilder = Bio::Seq::SeqFactory->new('-type' => 'Bio::PrimarySeq');
my $seq = $seqbuilder->create(-seq => 'ACTGAT', -display_id => 'exampleseq'); print "seq is a ", ref($seq), "\n";
Description
A generic way to build Sequence objects via a pluggable factory. This
reduces the amount of code that looks like
  if( $type  eq 'Bio::PrimarySeq' ) { ... } 
elsif( $type eq 'Bio::Seq::RichSeq' ) { ... }
Methods description
None available.
Methods code
No methods available.
General documentation
FEEDBACKTop
Mailing ListsTop
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list. Your participation is much appreciated.
  bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support Top
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
with code and data examples if at all possible.
Reporting BugsTop
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
  https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Jason StajichTop
Email jason-at-bioperl.org
APPENDIXTop
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
createTop
 Title   : create
Usage : my $seq = $seqbuilder->create(-seq => 'CAGT',
-id => 'name');
Function: Instantiates new Bio::PrimarySeqI (or one of its child classes)
This object allows us to genericize the instantiation of sequence
objects.
Returns : Bio::PrimarySeqI
Args : initialization parameters specific to the type of sequence
object we want. Typically
-seq => $str,
-display_id => $name