Bio::Factory SequenceFactoryI
SummaryIncluded librariesPackage variablesSynopsisDescriptionGeneral documentation
Bio::Factory::SequenceFactoryI - This interface allows for generic building of sequences in factories which create sequences (like SeqIO)
Package variables
No package variables defined.
# do not use this object directly it is an interface
# get a Bio::Factory::SequenceFactoryI object like
    use Bio::Seq::SeqFactory;
my $seqbuilder = Bio::Seq::SeqFactory->new('-type' => 'Bio::PrimarySeq');
my $seq = $seqbuilder->create(-seq => 'ACTGAT', -display_id => 'exampleseq'); print "seq is a ", ref($seq), "\n";
A generic way to build Sequence objects via a pluggable factory. This
reduces the amount of code that looks like
  if( $type  eq 'Bio::PrimarySeq' ) { ... } 
elsif( $type eq 'Bio::Seq::RichSeq' ) { ... }
Methods description
None available.
Methods code
No methods available.
General documentation
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AUTHOR - Jason StajichTop
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
 Title   : create
Usage : my $seq = $seqbuilder->create(-seq => 'CAGT',
-id => 'name');
Function: Instantiates new Bio::PrimarySeqI (or one of its child classes)
This object allows us to genericize the instantiation of sequence
Returns : Bio::PrimarySeqI
Args : initialization parameters specific to the type of sequence
object we want. Typically
-seq => $str,
-display_id => $name