Bio::Map EntityI
SummaryIncluded librariesPackage variablesSynopsisDescriptionGeneral documentationMethods
Toolbar
WebCvs
Summary
Bio::Map::EntityI - An Entity Interface
Package variables
No package variables defined.
Inherit
Bio::Root::RootI
Synopsis
    # do not use this module directly
Description
This interface describes the basic methods required for entities. An Entity is a
kind of Bio::Map object that holds instance-specific data but relies on
registering itself with a PositionHandler to handle its relationships with
other entities. These relationships between objects are based around shared
Positions, so Bio::Map::PositionI objects are a special kind of EntityI, along
with Bio::Map::MappableI and Bio::Map::MapI objects.
Methods
get_position_handlerDescriptionCode
Methods description
get_position_handlercode    nextTop
 Title   : get_position_handler
Usage : my $position_handler = $entity->get_position_handler();
Function: Gets a PositionHandlerI that $entity is registered with.
Returns : Bio::Map::PositionHandlerI object
Args : none
Methods code
get_position_handlerdescriptionprevnextTop
sub get_position_handler {
    my $self = shift;
    $self->throw_not_implemented();
}
General documentation
FEEDBACKTop
Mailing ListsTop
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list. Your participation is much appreciated.
  bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support Top
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
with code and data examples if at all possible.
Reporting BugsTop
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
  https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Sendu BalaTop
Email bix@sendu.me.uk
APPENDIXTop
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
PositionHandlerI-based methodsTop
 Any methods related to interation with other entities should be implemented
as a call to the PositionHandler