| Clone | An central map object representing a clone |
| Contig | A MapI implementation handling the contigs of a
Physical Map (such as FPC) |
| CytoMap | A Bio::MapI compliant map implementation handling cytogenic bands |
| CytoMarker | An object representing a marker. |
| CytoPosition | Marker class with cytogenetic band storing attributes |
| EntityI | An Entity Interface |
| FPCMarker | An central map object representing a marker |
| Gene | An gene modelled as a mappable element. |
| GeneMap | A MapI implementation to represent the area around a gene |
| GenePosition | A typed position, suitable for modelling the various
regions of a gene. |
| GeneRelative | Represents being relative to named sub-regions of a
gene. |
| LinkageMap | A representation of a genetic linkage map. |
| LinkagePosition | Create a Position for a Marker that will be placed
on a Bio::Map::LinkageMap |
| MapI | Interface for describing Map objects in bioperl |
| Mappable | An object representing a generic map element
that can have multiple locations in several maps. |
| MappableI | An object that can be placed in a map |
| Marker | An central map object representing a generic marker
that can have multiple location in several maps. |
| MarkerI | Interface for basic marker functionality |
| Microsatellite | An object representing a Microsatellite marker. |
| OrderedPosition | Abstracts the notion of a member
of an ordered list of markers. Each marker is a certain distance
from the one in the ordered list before it. |
| OrderedPositionWithDistance | Abstracts the notion of a member
of an ordered list of markers. Each marker is a certain distance
from the one in the ordered list before it. |
| Physical | A class for handling a Physical Map (such as FPC) |
| Position | A single position of a Marker, or the range over which
that marker lies, in a Map |
| PositionHandler | A Position Handler Implementation |
| PositionHandlerI | A Position Handler Interface |
| PositionI | Abstracts the notion of a position having a value in the context of a marker and a Map |
| PositionWithSequence | A position with a sequence. |
| Prediction | An object representing the predictions of something
that can have multiple locations in several maps. |
| Relative | Represents what a Position's coordiantes are relative to. |
| RelativeI | Interface for describing what a Position's coordiantes are
relative to. |
| SimpleMap | A MapI implementation handling the basics of a Map |
| TranscriptionFactor | A transcription factor modelled as a mappable
element |