Bio::Search BlastStatistics
SummaryIncluded librariesPackage variablesSynopsisDescriptionGeneral documentationMethods
Toolbar
WebCvs
Summary
Bio::Search::BlastStatistics - An object for Blast statistics
Package variables
No package variables defined.
Inherit
Bio::Root::RootI Bio::Search::StatisticsI
Synopsis
          # this is a wrapper to hold the statistics from a Blast report
my $bs = $result->get_statistics();
# you can get a statistic generically, like this:
my $kappa = $bs->get_statistic("kappa");
# or specifically, like this:
my $kappa2 = $bs->get_kappa();
Description
This is a basic container to hold the statistics returned from a Blast.
Methods
new
No description
Code
get_statisticDescriptionCode
set_statisticDescriptionCode
Methods description
get_statisticcode    nextTop
 Title   : get_statistic
Usage : $statistic_object->get_statistic($statistic_name);
Function: Get the value of a statistic named $statistic_name
Returns : A scalar that should be a string
Args : A scalar that should be a string
set_statisticcodeprevnextTop
 Title   : set_statistic
Usage : $statistic_object->set_statistic($statistic_name => $statistic_value);
Function: Set the value of a statistic named $statistic_name to $statistic_value
Returns : Void
Args : A hash containing name=>value pairs
Methods code
newdescriptionprevnextTop
sub new {
    my ($class, @args) = @_; 
          # really, don't bother with any initial initialization
my $self = $class->SUPER::new(@args); return $self;
}
get_statisticdescriptionprevnextTop
sub get_statistic {
   my ($self,$arg) = @_;
     return $self->{$arg};
}
set_statisticdescriptionprevnextTop
sub set_statistic {
   my ($self,%args) = @_;
     foreach (keys %args) {
          $self->{$_} = $args{$_};
     }
}



1;
}
General documentation
FEEDBACKTop
Mailing ListsTop
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list. Your participation is much appreciated.
  bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support Top
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
with code and data examples if at all possible.
Reporting BugsTop
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
  https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Chad MatsallaTop
Email bioinformatics1 at dieselwurks dot com
APPENDIXTop
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _