Bio::Search GenericDatabase
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Summary
Bio::Search::GenericDatabase - Generic implementation of Bio::Search::DatabaseI
Package variables
No package variables defined.
Inherit
Bio::Root::Root Bio::Search::DatabaseI
Synopsis
    use Bio::Search::GenericDatabase;
$db = Bio::Search::GenericDatabase->new( -name => 'my Blast db', -date => '2001-03-13', -length => 2352511, -entries => 250000 ); $name = $db->name(); $date = $db->date(); $num_letters = $db->letters(); $num_entries = $db->entries();
Description
This module provides a basic implementation of Bio::Search::DatabaseI.
See documentation in that module for more information.
Methods
new
No description
Code
nameDescriptionCode
dateDescriptionCode
lettersDescriptionCode
entriesDescriptionCode
Methods description
namecode    nextTop
See Bio::Search::DatabaseI::name() for documentation
This implementation is a combined set/get accessor.
datecodeprevnextTop
See Bio::Search::DatabaseI::date() for documentation
This implementation is a combined set/get accessor.
letterscodeprevnextTop
See Bio::Search::DatabaseI::letters() for documentation
This implementation is a combined set/get accessor.
entriescodeprevnextTop
See Bio::Search::DatabaseI::entries() for documentation
This implementation is a combined set/get accessor.
Methods code
newdescriptionprevnextTop
sub new {
    my ($class, @args) = @_; 
    my $self = $class->SUPER::new(@args);
    my ($name, $date, $length, $ents) = 
        $self->_rearrange( [qw(NAME DATE LENGTH ENTRIES)], @args);

    $name    && $self->name($name);
    $date    && $self->date($date);
    $length  && $self->letters($length);
    $ents    && $self->entries($ents);

    return $self;
}
namedescriptionprevnextTop
sub name {
#---------------
my $self = shift; if(@_) { my $name = shift; $name =~ s/(^\s+|\s+$)//g; $self->{'_db'} = $name; } $self->{'_db'};
}
datedescriptionprevnextTop
sub date {
#-----------------------
my $self = shift; if(@_) { $self->{'_dbDate'} = shift; } $self->{'_dbDate'};
}
lettersdescriptionprevnextTop
sub letters {
#----------------------
my $self = shift; if(@_) { $self->{'_dbLetters'} = shift; } $self->{'_dbLetters'};
}
entriesdescriptionprevnextTop
sub entries {
#------------------
my $self = shift; if(@_) { $self->{'_dbEntries'} = shift; } $self->{'_dbEntries'}; } 1;
}
General documentation
FEEDBACKTop
Mailing Lists Top
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
  bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support Top
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
with code and data examples if at all possible.
Reporting BugsTop
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
  https://redmine.open-bio.org/projects/bioperl/
AUTHOR Top
Steve Chervitz <sac@bioperl.org>
See the FEEDBACK section for where to send bug reports and comments.
COPYRIGHTTop
Copyright (c) 2001 Steve Chervitz. All Rights Reserved.
DISCLAIMERTop
This software is provided "as is" without warranty of any kind.
APPENDIXTop
The rest of the documentation details each of the object methods.