Bio::Search Processor
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Summary
Bio::Search::Processor - DESCRIPTION of Object
Package variables
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Included modules
Bio::Root::Version
Synopsis
Give standard usage here
Description
Describe the object here
Methods
newDescriptionCode
Methods description
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 Title   : new
Usage : $proc = Bio::Search::Processor->new -file => $filename,
-algorithm => 'Algorithm' ;
Function: Used to specify and initialize a data processor of search
algorithm results.
Returns : A processor specific to the algorithm type, if it exists.
Args : -file => filename
-algorithm => algorithm specifier
-fh => filehandle to attach to (file or fh required)
Methods code
newdescriptionprevnextTop
sub new {
    my $type = shift;
    my $proc;
    my ($module, $load, $algorithm);

    my %args = @_;

    exists $args{'-algorithm'} or do { 
	print STDERR "Must supply an algorithm!";
	return;
    };

    $algorithm = $args{'-algorithm'} || $args{'-ALGORITHM'};

    $module = "_<Bio/Search/Processor/$algorithm.pm";
    $load = "Bio/Search/Processor/$algorithm.pm";

    unless ( $main::{$module} ) {
	eval { require $load; };
	if ( $@ ) {
	    print STDERR <<"EOF";
$load: $algorithm cannot be found
Exception $@
For more information about the Search/Processor system please see the
Processor docs. This includes ways of checking for processors at
compile time, not run time
EOF
return; } } $proc = "Bio::Search::Processor::$algorithm"->new(@_); return $proc; } 1;
}
General documentation
FEEDBACKTop
Mailing ListsTop
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
  bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support Top
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
with code and data examples if at all possible.
Reporting BugsTop
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
  https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Aaron MackeyTop
Email amackey@virginia.edu
Describe contact details here
APPENDIXTop
The rest of the documentation details each of the object
methods. Internal methods are usually preceded with a _