| BaseSeqProcessor | Base implementation for a SequenceProcessor |
| EncodedSeq | subtype of L to store DNA that encodes a protein |
| LargeLocatableSeq | LocatableSeq object that stores sequence as
files in the tempdir |
| LargePrimarySeq | PrimarySeq object that stores sequence as
files in the tempdir (as found by File::Temp) or the default method in
Bio::Root::Root |
| LargeSeq | SeqI compliant object that stores sequence as
files in /tmp |
| LargeSeqI | Interface class for sequences that cache their
residues in a temporary file |
| Meta | Generic superclass for sequence objects with
residue-based meta information |
| MetaI | Interface for sequence objects with residue-based
meta information |
| PrimaryQual | Bioperl lightweight Quality Object |
| PrimedSeq | A sequence and a pair of primers matching on it |
| QualI | Interface definition for a Bio::Seq::Qual |
| Quality | Implementation of sequence with residue quality
and trace values |
| RichSeq | Module implementing a sequence created from a rich
sequence database entry |
| RichSeqI | interface for sequences from rich data sources, mostly databases |
| SeqBuilder | Configurable object builder for sequence stream parsers |
| SeqFactory | Instantiation of generic Bio::PrimarySeqI (or derived) objects through a factory |
| SeqFastaSpeedFactory | Rapid creation of Bio::Seq objects through a factory |
| SeqWithQuality | Bioperl object packaging a sequence with its quality.
Deprecated class, use Bio::Seq::Quality instead! |
| SequenceTrace | Bioperl object packaging a sequence with its trace |
| SimulatedRead | Read with sequencing errors taken from a reference sequence |
| TraceI | Interface definition for a Bio::Seq::Trace |