Bio::Expression DataSet
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Summary
Bio::Expression::DataSet - DESCRIPTION of Object
Package variables
No package variables defined.
Inherit
Bio::Root::Root
Synopsis
Give standard usage here
Description
Describe the object here
Methods
newDescriptionCode
_initializeDescriptionCode
accessionDescriptionCode
nameDescriptionCode
dbDescriptionCode
pubmed_idDescriptionCode
web_linkDescriptionCode
contactDescriptionCode
samplesDescriptionCode
descriptionDescriptionCode
designDescriptionCode
design_descriptionDescriptionCode
get_samplesDescriptionCode
_load
No description
Code
Methods description
new()code    nextTop
 Usage   : my $obj = Bio::Expression::DataSet->new();
Function: Builds a new Bio::Expression::DataSet object
Returns : an instance of Bio::Expression::DataSet
Args :
_initialize()codeprevnextTop
 Usage   : $obj->_initialize(%arg);
Function: Internal method to initialize a new Bio::Expression::DataSet object
Returns : true on success
Args : passed through to new()
accession()codeprevnextTop
 Usage   : $obj->accession($newval)
Function:
Example :
Returns : value of accession (a scalar)
Args : on set, new value (a scalar or undef, optional)
name()codeprevnextTop
 Usage   :
Function:
Example :
Returns :
Args :
db()codeprevnextTop
 Usage   : $obj->db($newval)
Function:
Example :
Returns : value of db (a scalar)
Args : on set, new value (a scalar or undef, optional)
pubmed_id()codeprevnextTop
 Usage   : $obj->pubmed_id($newval)
Function:
Example :
Returns : value of pubmed_id (a scalar)
Args : on set, new value (a scalar or undef, optional)
web_link()codeprevnextTop
 Usage   : $obj->web_link($newval)
Function:
Example :
Returns : value of web_link (a scalar)
Args : on set, new value (a scalar or undef, optional)
contact()codeprevnextTop
 Usage   : $obj->contact($newval)
Function:
Example :
Returns : value of contact (a scalar)
Args : on set, new value (a scalar or undef, optional)
samples()codeprevnextTop
 Usage   : $obj->samples($newval)
Function:
Example :
Returns : value of samples (a scalar)
Args : on set, new value (a scalar or undef, optional)
description()codeprevnextTop
 Usage   : $obj->description($newval)
Function:
Example :
Returns : value of description (a scalar)
Args : on set, new value (a scalar or undef, optional)
design()codeprevnextTop
 Usage   : $obj->design($newval)
Function:
Example :
Returns : value of design (a scalar)
Args : on set, new value (a scalar or undef, optional)
design_description()codeprevnextTop
 Usage   : $obj->design_description($newval)
Function:
Example :
Returns : value of design_description (a scalar)
Args : on set, new value (a scalar or undef, optional)
get_samples()codeprevnextTop
 Usage   :
Function:
Example :
Returns :
Args :
Methods code
newdescriptionprevnextTop
sub new {
  my($class,@args) = @_;

  my $self = $class->SUPER::new(@args);
  $self->_initialize(@args);
  return $self;
}
_initializedescriptionprevnextTop
sub _initialize {
  my($self,%arg) = @_;

  foreach my $arg (keys %arg){
    my $marg = $arg;
    $marg =~ s/^-//;
    $self->$marg($arg{$arg}) if $self->can($marg);
  }

  return 1;
}
accessiondescriptionprevnextTop
sub accession {
  my($self,$val) = @_;
  $self->{'accession'} = $val if defined($val);
  return $self->{'accession'};
}
namedescriptionprevnextTop
sub name {
  my($self,$val) = @_;
  $self->_load();
  $self->{'db'} = $val if defined($val);
  return $self->{'db'};
}
dbdescriptionprevnextTop
sub db {
  my($self,$val) = @_;
  $self->{'db'} = $val if defined($val);
  return $self->{'db'};
}
pubmed_iddescriptionprevnextTop
sub pubmed_id {
  my($self,$val) = @_;
  $self->_load();
  $self->{'pubmed_id'} = $val if defined($val);
  return $self->{'pubmed_id'};
}
web_linkdescriptionprevnextTop
sub web_link {
  my($self,$val) = @_;
  $self->_load();
  $self->{'web_link'} = $val if defined($val);
  return $self->{'web_link'};
}
contactdescriptionprevnextTop
sub contact {
  my($self,$val) = @_;
  $self->_load();
  $self->{'contact'} = $val if defined($val);
  return $self->{'contact'};
}
samplesdescriptionprevnextTop
sub samples {
  my($self,$val) = @_;
  $self->_load();
  $self->{'samples'} = $val if defined($val);
  return $self->{'samples'};
}
descriptiondescriptionprevnextTop
sub description {
  my($self,$val) = @_;
  $self->_load();
  $self->{'description'} = $val if defined($val);
  return $self->{'description'};
}
designdescriptionprevnextTop
sub design {
  my($self,$val) = @_;
  $self->_load();
  $self->{'design'} = $val if defined($val);
  return $self->{'design'};
}
design_descriptiondescriptionprevnextTop
sub design_description {
  my($self,$val) = @_;
  $self->_load();
  $self->{'design_description'} = $val if defined($val);
  return $self->{'design_description'};
}
get_samplesdescriptionprevnextTop
sub get_samples {
  my ($self,@args) = @_;
  if ( $self->samples() ) {
    return @{ $self->samples() };
  }
  else {
    return ();
  }
}
_loaddescriptionprevnextTop
sub _load {
  my $self = shift;
  if ( $self->{'_load'} ) {
    return 1;
  }
  $self->{'_load'}++;
  $self->db->fill_dataset( $self );
  return $self->{'_load'};
}

1;
}
General documentation
FEEDBACKTop
Mailing ListsTop
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list. Your participation is much appreciated.
  bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support Top
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
with code and data examples if at all possible.
Reporting BugsTop
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
  http://bugzilla.open-bio.org/
AUTHOR - Allen DayTop
Email allenday@ucla.edu
APPENDIXTop
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _