Bio::Tools::Run::BWA Config
SummaryIncluded librariesPackage variablesSynopsisDescriptionGeneral documentation
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Summary
Bio::Tools::Run::BWA::Config - Configuration data for BWA commands
Package variables
Privates (from "my" definitions)
@sub_params;
@sub_switches;
@sub_program_switches = grep /^$subcmd\|/, @program_switches
@sub_program_params = grep /^$subcmd\|/, @program_params
Included modules
Bio::Root::Root
Exporter
Inherit
Bio::Root::Root
Synopsis
Used internally by Bio::Tools::Run::BWA.
Description
This package exports information describing BWA commands, parameters,
switches, and input and output filetypes for individual BWA commands.
See http://bio-bwa.sourceforge.net/bwa.shtml.
Methods description
None available.
Methods code
No methods available.
General documentation
FEEDBACKTop
Mailing ListsTop
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list. Your participation is much appreciated.
  bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
SupportTop
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
with code and data examples if at all possible.
Reporting BugsTop
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
  http://redmine.open-bio.org/projects/bioperl/
AUTHOR - Mark A. JensenTop
Email maj@fortinbras.us
Describe contact details here
CONTRIBUTORSTop
Additional contributors names and emails here
APPENDIXTop
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _